About the Project
An open access the integrated chicken reference genomes and gene catalog (ICRGGC) were constructed by integrating the metagenomic sequencing data of chicken gut microbiome from four studies in China and European countries. In total, 12,339 metagenomic-assembled genomes on strain level from 1,978 species were generated. According to the genomes, there were 893 novel species and 38 novel genera. In addition, we constructed a gene catalog consist of 16.6 million genes. The draft genomes, gene catalog and its relative abundance were available in this webpage.
1,978
Number of Species
893
Number of New Species
12,339
Number of Strain
9,845
Number of New Strain
16,565,684
Number of Genes
68.2%
the Proportion of eggNOG Annotated Genes
Search
Examples：
- MAGs_co_1
NO. | Genome ID | Phylum | Class | Order | Family | Genus | Species |
|---|
1 | Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | Ligilactobacillus | ||
2 | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Prevotella | Prevotella sp900540415 | |
3 | Firmicutes A | Clostridia | Lachnospirales | Lachnospiraceae | Eisenbergiella | ||
4 | Firmicutes A | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Romboutsia | ||
5 | Actinobacteriota | Actinomycetia | Actinomycetales | Dermabacteraceae | Brachybacterium | Brachybacterium sp003711805 | |
6 | Firmicutes A | Clostridia | Lachnospirales | Lachnospiraceae | 992a | ||
7 | Synergistota | Synergistia | Synergistales | Synergistaceae | An23 | An23 sp900544635 | |
8 | Firmicutes A | Clostridia | Lachnospirales | Lachnospiraceae | 992a | ||
9 | Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | Facklamia A | Facklamia A tabacinasalis | |
10 | Firmicutes A | Clostridia | Oscillospirales | Oscillospiraceae | Flavonifractor | Flavonifractor sp002161215 |